#### We are using the nubblelized oax output file that had the 
####  inversions removed
####

../SRC/break_into_levs ../new_postNUB_BOB/May_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/May_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r May/zetageo_May_nub.s2r
mv uvsurfgeo_summ.v2r May/uvsurfgeo_May_nub.v2r
mv uvbargeo_summ.v2r May/uvbargeo_May_nub.v2r
mv uvbottgeo_summ.v2r May/uvbottgeo_May_nub.v2r
mv F6.HOT.icq4 May/F6.HOT.May_nub.icq4




../SRC/break_into_levs ../new_postNUB_BOB/Jun_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/Jun_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r Jun/zetageo_Jun_nub.s2r
mv uvsurfgeo_summ.v2r Jun/uvsurfgeo_Jun_nub.v2r
mv uvbargeo_summ.v2r Jun/uvbargeo_Jun_nub.v2r
mv uvbottgeo_summ.v2r Jun/uvbottgeo_Jun_nub.v2r
mv F6.HOT.icq4 Jun/F6.HOT.Jun_nub.icq4




../SRC/break_into_levs ../new_postNUB_BOB/Jul_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/Jul_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r Jul/zetageo_Jul_nub.s2r
mv uvsurfgeo_summ.v2r Jul/uvsurfgeo_Jul_nub.v2r
mv uvbargeo_summ.v2r Jul/uvbargeo_Jul_nub.v2r
mv uvbottgeo_summ.v2r Jul/uvbottgeo_Jul_nub.v2r
mv F6.HOT.icq4 Jul/F6.HOT.Jul_nub.icq4




../SRC/break_into_levs ../new_postNUB_BOB/Aug_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/Aug_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r Aug/zetageo_Aug_nub.s2r
mv uvsurfgeo_summ.v2r Aug/uvsurfgeo_Aug_nub.v2r
mv uvbargeo_summ.v2r Aug/uvbargeo_Aug_nub.v2r
mv uvbottgeo_summ.v2r Aug/uvbottgeo_Aug_nub.v2r
mv F6.HOT.icq4 Aug/F6.HOT.Aug_nub.icq4