#### We are using the nubblelized oax output file that had the 
####  inversions removed
####

../SRC/break_into_levs ../new_postNUB_BOB/Sep_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/Sep_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r Sep/zetageo_Sep_nub.s2r
mv uvsurfgeo_summ.v2r Sep/uvsurfgeo_Sep_nub.v2r
mv uvbargeo_summ.v2r Sep/uvbargeo_Sep_nub.v2r
mv uvbottgeo_summ.v2r Sep/uvbottgeo_Sep_nub.v2r
mv F6.HOT.icq4 Sep/F6.HOT.Sep_nub.icq4




../SRC/break_into_levs ../new_postNUB_BOB/Oct_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/Oct_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r Oct/zetageo_Oct_nub.s2r
mv uvsurfgeo_summ.v2r Oct/uvsurfgeo_Oct_nub.v2r
mv uvbargeo_summ.v2r Oct/uvbargeo_Oct_nub.v2r
mv uvbottgeo_summ.v2r Oct/uvbottgeo_Oct_nub.v2r
mv F6.HOT.icq4 Oct/F6.HOT.Oct_nub.icq4




../SRC/break_into_levs ../new_postNUB_BOB/Nov_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/Nov_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r Nov/zetageo_Nov_nub.s2r
mv uvsurfgeo_summ.v2r Nov/uvsurfgeo_Nov_nub.v2r
mv uvbargeo_summ.v2r Nov/uvbargeo_Nov_nub.v2r
mv uvbottgeo_summ.v2r Nov/uvbottgeo_Nov_nub.v2r
mv F6.HOT.icq4 Nov/F6.HOT.Nov_nub.icq4




../SRC/break_into_levs ../new_postNUB_BOB/Dec_hb_cleaned_notime_nub_zlevs_smoothed.out
 
 rm sab_summ_clim2.lst         
 
 ../SRC/run_BIO2LST	    
 
 rm sab_clim2.bound.data       

 ../SRC/pick_lst < ../input_files/pick_lst.in        

 rm sab_summ_clim2.elev        

 ../SRC/sss1_xy_lst2 < ../input_files/sss1_xy_lst2.in
 
 cp ../new_postNUB_BOB/Dec_hb_cleaned_notime_nub_sg.out hydrography/jan_clim_fem_bat.out

 ../SRC/run_f6bc
 
mv zetageo_summ.s2r Dec/zetageo_Dec_nub.s2r
mv uvsurfgeo_summ.v2r Dec/uvsurfgeo_Dec_nub.v2r
mv uvbargeo_summ.v2r Dec/uvbargeo_Dec_nub.v2r
mv uvbottgeo_summ.v2r Dec/uvbottgeo_Dec_nub.v2r
mv F6.HOT.icq4 Dec/F6.HOT.Dec_nub.icq4