Papers published in Journal:
1. Jainab Khatun and Morgan C Giddings. In response to On E-values for Tandem MS scoring. Bioinformatics, Letter To The Editor 24,14, 1654 (2008). Full article
2. Jainab Khatun, Eric Hamlett and Morgan C. Giddings. Incorporating sequence information into the scoring function: A hidden Markov model for improved peptide identification. Bioinformatics 24,5, 674-681 (2008). Full article
3. Jainab Khatun, Kevin Ramkissoon and Morgan C. Giddings. Fragmentation Characteristics of Collision-Induced Dissociation in MALDI TOF/TOF Mass Spectrometry. Analytical Chemistry 79,8, 3032-3040 (2007). Full article
4. Wisz, M.S., Khatun, J., and Giddings, M.C. . Computational methods enabling genome-based protein identification from large, complex genomes using mass spectrometry data. Third IEEE Workshop on Genomic Signal Processing and Statistics (GENSIPS) . 2005 . Newport, RI. Full article
5. Jainab Khatun, Sagar Khare and Nikolay V. Dokholyan. Can Contact Potentials reliably predict the protein stability? . Journal of Molecular Biology 336, 1223-1238 (2004). Full article
6. Jainab Khatun and Krishna Rai Dastidar. The effect of electronic auto-ionization on vibrational branching ratio in (1+1)-photon resonance enhanced multi-photon ioni zation of H2 molecules: dependence on laser intensity J. Phys. B 32, 373 (1999). Full article
7. Jainab Khatun and Krishna Rai Dastidar. Theoretical study of vibrational branching ratio and photoelectron angular distribution in (1+1')-photon resonance-enhanced multi-photon ionization of HD and D2 molecules Phys.Rev.A 53, 4326 (1996). Full article
8. Jainab Khatun and Krishna Rai Dastidar. Theoretical study of photoelectron angular distribution in (1+1')-photon resonance-enhanced multiphoton ionization of H 2 molecule Phys.Rev.A 52, 2971 (1995). Full article
9. Jainab Khatun, S. Syanal and Krishna Rai Dastidar. Non-Franck-Condon vibrational distribution in the (1+1')-photon resonance-enhanced multiphoton ionization of H2 Phys.Rev.A 49, 4765 (1994). Full article
Chapter in Book:
10. Krishna Rai Dastidar, Jainab Khatun and T.K. Rai Dastidar: "Multiphoton absorption to and from autoionizing states and ionizing continuum": ATOMIC MOLECULAR AND CLUSTER PHYSICS, eds. S.A. Ahmed, Narosa Publishing House, page 158, 1997.
Papers in Symposia/Conferences:
Talk presented in Conferences:11. Jainab Khatun, Jameson Miller, Mark Holmes and Morgan Giddings, Proteogenomic Mapping for the Human Genome to Identify Protein-Coding Sequences, Institute of Biological Engineering, 2008 Annual Conference, 2008, Chapel Hill, North Carolina.
12. Jainab Khatun, Christopher Maier, Morgan Giddings, Proteogenomic Mapping for the Human Genome: Technologies and Challenges for Identifying Protein-Coding Sequences; U.S. HUPO Fourth Annual Conference, 2008. Bethesda, MD.
13. Jainab Khatun, Christopher Maier, Jameson Miller and Morgan C Giddings, "Proteogenomic mapping for the human genome: Identifying protein-coding sequences", Genome Informatics, 2007, Cold Spring Harbor Laboratory, NewYork.
14. Jainab Khatun and Morgan C. Giddings, "Incoroporating sequence information into the scoring function: a hidden Markov model for improved peptide identification". Human Proteome Organization (HUPO) 5th Annual World Congress, 2006, Long Beach, CA.
15.Jainab Khatun and Morgan C. Giddings, A Machine Learning Model for de novo Sequencing of Peptides from Tandem Mass Spectrometry Data, Scientific Retreat at the Beach, September 16-18, 2005, Writesville Beach, North Carolina.
Poster presented in Conferences (selected):16. Jainab Khatun, Jameson Miller, Mike Wisz, Dongmei Yang, Atul Shah, Kristen Dang, Mark Holmes, Melissa Suarez, and Morgan C. Giddings: Genome-Based Peptide Fingerprint Scanning: A Comprehensive Open Source Software System for Protein Identification Using Unannotated Genome Sequence Data, Version 2. Worldwide Developers Conference (WWDC), June, 2007, Sanfrancisco, CA.
17. Jainab Khatun, Jameson Miller, Mike Wisz, Dongmei Yang, Atul Shah, Kristen Dang, Mark Holmes, Melissa Suarez, and Morgan C. Giddings: GFS Version 2: A Comprehensive Open Source Software System for Protein Identification Using Unannotated Genome Sequence Data, Poster presented in Human Proteome Organization (HUPO) 5th Annual World Congress, Nov, 2006, Long Beach, CA.
18. Jainab Khatun, Sagar Khare & Nikolay Dokholyan, A new method for estimating contact interactions in proteins, Poster presented in Structural Biology Symposium at NIEHS Sep. 23, 2003, NIEHS, RTP, North Carolina.
19. Jainab Khatun, S. Sanyal and K. Rai Dastidar: "(1+1)-photon REMPI of H2 via B1Σu state: Effect of near resonant channel via C u state on the vibrational branching of the H2+ ion". Proceeding of National Laser Symposium, page 267, Feb. 17-19, 1993, I.I.T. Madras.
20. Jainab Khatun, S. Sanyal, Krishna Rai Dastidar and T.K. Rai Dastidar: "Effect of autoionization on (1+1)-photon resonance enhanced multiphoton ionization of H2, 7th International Symposium on Resonance Ionization Spectroscopy and Its Applications (RIS-1994), Institute fur physik, Universitat Mainz, D-55029 Mainz, Bernkastel-kues, Germany.
21. Jainab Khatun and Krishna Rai Dastidar: " Theoretical study of photoelectron angular distribution in (1+1)-photon ionization of H2 molecule": XIX International Conference on the Physics of Electronic and Atomic Collision, page 663, July 26- August 1, 1995, British Columbia, Canada.
22. Jainab Khatun and Krishna Rai Dastidar: Proceeding of the Second Euro Physics Conference on Photon and Electron Collisions with Atoms, page 124, July 23-26, 1996, Queen's University, Belfast, N. Ireland, UK.
23. Jainab Khatun and Krishna Rai Dastidar: "Resonance enhanced multiphoton ionization of two isotopes of H2 molecules: Vibrational branching ratio and photoelectron angular distribution": Presented poster in the 7-th International Conference on Multiphoton Process, Sept.30-Oct.4, 1996, Max-Planck-Institute fur Quantenoptik, Germany.
24. Jainab Khatun and Krishna Rai Dastidar: " The effect of autoionization on (1+1')-photon resonance enhanced Multiphoton ionization (REMPI) of H2 molecules" presented in XX International Conference on the Physics of Electronic and Atomic and Collision, July 23-29, 1997, Vienna, Austria.