assemble.py

Concatenates sequences contained in fasta files according to a list file.
Sequences may be provided in one or more fasta files.

-lis           list file containing sequence names to be concatenated.
               Names are not case sensitive. Lines beginning with
               a pound symbol are ignored. A string appearing
               after a colon is the name of the concatenated sequence.
               In the absence of a specified name, the new name
               is a concatenation of the names of the sequences.
For example, 
s1 s2 : a
s3 s4  ...
concatenates s1 and s2 and names the result a, s3 and s4 --> s3s4, etc
-byname        concatenates sequences in two fasta files by name
               in the order supplied on the command line.
-degap         remove gap characters
-out           name of outfile. Prints to stdout by default.
-h             Prints documentation.
-v             { [1] } verbosity
-version       print version info and exit

$Id: assemble.py,v 1.1 2004/10/10 02:53:09 nghoffma Exp $