consensus.py

Calculates the consensus for an alignment of nucleotide or protein sequences.

-cg            include to count gaps in the consensus calculation
-plu           { [2] } plurality required for assignment of consensus
               to a character
-h             Prints documentation.
-v             { [1] } verbosity
-out           name of outfile. Writes to stdout if unspecified.
	
-version       print version info and exit

$Id: consensus.py,v 1.1 2004/10/10 02:53:09 nghoffma Exp $