fasta2phylip.py

Converts fasta format sequence alignment to phylip2 (sequential)
format. Mercilessly truncates sequence names to 10 characters.

-out           { [out.phylip2] } Name of output file
-re            Renames sequences s1, s2 .... sN. Useful for long
               sequence names
-h             Prints documentation.
-v             { [1] } verbosity
-range         Restricts the set of sequences written to the output
               file to a range. For example, use -range=5,27 to
               use the fifth to 27th sequences in the input file.
-s             superclean. Changes all characters found in either
               names or sequence not in 'ACGTN\n -1234567890S'
               to N.
-version       print version info and exit

$Id: fasta2phylip.py,v 1.1 2004/10/10 02:53:10 nghoffma Exp $