gapstrip.py

Removes columns from a sequence alignment in which a specified 
percent of sequences contain gap characters. Useful for preparing 
alignments for phylogenetic analysis.

-out           name of outfile. Prints to stdout by default.
-h             Prints documentation.
-v             { [1] } verbosity
-c             { [100] } Maximum percent of sequences permitted
               to have a gap character. for example cutoff=5 results
               in the removal of columns containing >5% gaps
-version       print version info and exit

$Id: gapstrip.py,v 1.1 2004/10/10 02:53:10 nghoffma Exp $