trim.py

Exclude a specified set of columns from a sequence alignment. 

-r             { [1-10000] } range: a string in the format a-b,c-d,...
               Coordinates are inclusive. A single position can
               be specified as p1-p1. For example, positions 1
               to 10, 20 to 30 and position 40 is specified as
               1-10,20-30,40-40 If the final value is greater
               than the length of the alignment, the alignment
               is returned to the end.
-degap         Strips gap characters from the sequences AFTER
               sequences have been trimmed
-out           name of outfile
-h             Prints documentation.
-v             { [1] } verbosity
-version       print version info and exit

$Id: trim.py,v 1.1 2004/10/10 02:53:10 nghoffma Exp $