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Books
  1. P.-T. Yap, T. Liu, D. Shen, C.-F. Westin, L. Shen, Eds., Multimodal Brain Image Analysis, ser. Lecture Notes in Computer Science, vol. 7509, Springer, 2012.
  2. L. Shen, T. Liu, P.-T. Yap, H. Huang, D. Shen, C.-F. Westin, Eds., Multimodal Brain Image Analysis, ser. Lecture Notes in Computer Science, vol. 8159, Springer, 2013.

Book Chapters
  1. G. Wu, H. Jia, Q. Wang, F. Shi, P.-T. Yap, D. Shen, "Emergence of Groupwise Registration in MR Brain Study," In Biosignal Processing: Principles and Practices. CRC Press, 2013.
  2. C.-Y. Wee, D. Zhang, L. Zhou, P.-T. Yap, D. Shen, "Machine Learning Techniques for AD/MCI Diagnosis and Prognosis," Machine Learning in Healthcare Informatics, Springer, 2012.
  3. M. Liu, X. Jiang, A. C. Kot, P.-T. Yap, "Application of Polar Harmonic Transforms to Fingerprint Classification," Emerging Topics in Computer Vision and its Applications, World Scientific Publishing, 2012.

Journal Articles
  1. P.-T. Yap, H. An, Y. Chen, D. Shen, "Uncertainty Estimation in Diffusion MRI Using The Non-Local Bootstrap," IEEE Transactions on Medical Imaging, 2014, accepted.
  2. K.-H. Thung, C.-Y.Wee, P.-T. Yap, D. Shen, "Neurodegenerative Disease Diagnosis using Incomplete Multi-Modality Data via Matrix Shrinkage and Completion," NeuroImage, 2014, accepted.
  3. Q. Wang, P.-T. Yap, G. Wu, D. Shen, "Diffusion Tensor Image Registration Using Hybrid Connectivity and Tensor Features," Human Brain Mapping, 2013, accepted.
  4. C.-Y. Wee, L. Wang, F. Shi, P.-T. Yap, D. Shen, "Diagnosis of Autism Spectrum Disorders Using Regional and Interregional Morphological Features," Human Brain Mapping, 2013, accepted.
  5. P.-T. Yap, H. An, Y. Chen, D. Shen, "Fiber-Driven Resolution Enhancement of Diffusion-Weighted Images," NeuroImage, vol. 84, pp. 939–950, 2014. [pdf]
  6. Y. Wang, J. Nie, P.-T. Yap, G. Li, F. Shi, X. Geng, L. Guo, D. Shen, "Knowledge-Guided Robust MRI Brain Extraction for Diverse Large-Scale Neuroimaging Studies on Humans and Non-Human Primates," PLOS ONE, 2013, accepted.
  7. L. Wang, F. Shi, P.-T. Yap, W. Lin, J. H. Gilmore, D. Shen, "Longitudinally Guided Level Sets for Consistent Tissue Segmentation of Neonates," Human Brain Mapping, vol. 34, no. 4, pp. 956-972, 2013. [pdf]
  8. Y. Zhang, P.-T. Yap, G. Wu, Q. Feng, J. Lian, W. Chen, D. Shen, "Resolution Enhancement of Lung 4D-CT Data Using Multi-Scale Inter-Phase Iterative Non-Local Means," Medical Physics, vol. 40, no. 5, pp. 051916, 2013. [pdf]
  9. C.-Y. Wee, P.-T. Yap, D. Zhang, L. Wang, D. Shen, for the ADNI, "Group-Constrained Sparse FMRI Connectivity Modeling for Mild Cognitive Impairment Identification Brain Structure and Function," Brain Structure and Function, 2013, accepted. [pdf]
  10. L. Wang, F. Shi, P.-T. Yap, W. Lin, J. H. Gilmore, D. Shen, "4D Multi-Modality Tissue Segmentation of Serial Infant Images," PLoS ONE, vol. 7, no. 9, pp. e44596, 2012. [pdf]
  11. P.-T. Yap, D. Shen, "Spatial Transformation of DWI Data Using Non-Negative Sparse Representation," IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 2035-2049, 2012. [pdf]
  12. C.-Y. Wee, P.-T. Yap, D. Shen, "Prediction of Alzheimer’s Disease and Mild Cognitive Impairment Using Cortical Morphological Patterns," Human Brain Mapping, accepted, 2012.
  13. Y. Zhang, G. Wu, P.-T. Yap, Q. Feng, J. Lian,  W. Chen, D. Shen, "Hierarchical Patch-Based Sparse Representation - A new approach for resolution enhancement of 4D-CT lung data," IEEE Transactions on Medical Imaging, vol. 31, no. 11, pp. 1993-2005, 2012. [pdf]
  14. F. Shi, P.-T. Yap, W. Gao, W. Lin, J. H. Gilmore, D. Shen, "Altered Structural Connectivity in Neonates at Genetic Risk for Schizophrenia: A Combined Study Using Morphological and White Matter Networks," NeuroImage, vol. 62, no. 3, pp. 1622-1633, 2012. [pdf]
  15. C.-Y. Wee*, P.-T. Yap*, K. Denny, J. N. Browndyke, G. G. Potter, K. A. Welsh-Bohmer, L. Wang, D. Shen, "Resting-State Multi-Spectrum Functional Connectivity Networks for Identification of MCI Patients," PLoS ONE, vol. 7, no. 5, pp. e37828, 2012. [pdf]
  16. Q. Wang, P.-T. Yap, G. Wu, D. Shen, "Application of Neuroanatomical Features to Tractography Clustering," Human Brain Mapping, accepted, 2012.
  17. J. Nie, L. Guo, K. Li, Y. Wang, G. Chen, L. Li, H. Chen, F. Deng, X. Jiang, T. Zhang, L. Huang, C. Faraco, D. Zhang, C. Guo, P.-T. Yap, X. Hu, G. Li, J. Lv, Y. Yuan, D. Zhu, J. Han, D. Sabatinelli, Q. Zhao, L. S. Miller, B. Xu, P. Shen, S. Platt, D. Shen, X. Hu, T. Liu, "Axonal Fiber Terminations Concentrate on Gyri," Cerebral Cortex, vol. 22, no. 12, pp. 2831-2839. [pdf]
  18. Manhua Liu, P.-T. Yap, "Invariant Representation of Orientation Fields for Fingerprint Indexing," Pattern Recognition, vol. 45, no. 7, pp. 2532-2542, 2012. [pdf]
  19. C.-Y. Wee, P.-T. Yap, D. Zhang, K. Denny, J. N. Browndyke, G.G. Potter, K.A. Welsh-Bohmer, L. Wang, D. Shen, "Identification of MCI Individuals Using Structural and Functional Connectivity Networks," NeuroImage, vol. 59, no. 3, pp. 2045-2056, 2012. [pdf]
  20. M. Kim, G. Wu, P.-T. Yap, D. Shen, "A General Fast Registration Framework by Learning Deformation-Appearance Correlation," IEEE Transactions on Image Processing, vol. 21, no. 4, pp. 1823 - 1833, 2012. [pdf]
  21. P.-T. Yap, Y. Fan, Y. Chen, J. Gilmore, W. Lin, D. Shen, "Development Trends of White Matter Connectivity in the First Years of Life," PLoS ONE, vol. 6, no. 9, pp. e24678, 2011. [pdf]
  22. H. Jia, P.-T. Yap, D. Shen, "Iterative Multi-Atlas-Based Multi-Image Segmentation with Tree-Based Registration," NeuroImage, vol. 59, no. 1, pp. 422-430, 2011. [pdf]
  23. L. Zhou, Y. Wang, Y. Li, P.-T. Yap, D. Shen, "Hierarchical Anatomical Brain Networks for MCI Prediction: Revisiting Volumetric Measures," PLoS ONE, vol. 6, no. 7, pp. e21935, 2011. [pdf]
  24. P.-T. Yap, J.H. Gilmore, W. Lin, D. Shen, "PopTract: Population-Based Tractography," IEEE Transactions on Medical Imaging, vol. 30, no. 10, pp. 1829 - 1840, 2011. [pdf]
  25. F. Shi, P.-T. Yap, G.Wu, H. Jia, J.H. Gilmore, W. Lin, D. Shen, "Infant Brain Atlases from Neonates to 1- and 2-Year-Olds," PLoS ONE, vol. 6, no. 4, pp. e18746, 2011. [pdf]
  26. P.-T. Yap, Y. Chen, H. An, Y. Yang, J. H. Gilmore, W. Lin, and D. Shen, "SPHERE: SPherical Harmonic Elastic REgistration of HARDI data," NeuroImage, vol. 55, no. 2, pp. 545-556, 2011. [pdf]
  27. C.-Y. Wee*, P.-T. Yap*, W. Li, K. Denny, J.N. Brownyke, G.G. Potter, K.A. Welsh-Bohmer, L. Wang, D. Shen, "Enriched White-Matter Connectivity Networks for Accurate Identification of MCI Patients," NeuroImage, vol. 54, no. 3, pp. 1812-1822, 2011. [pdf]
  28. H. Jia, P.-T. Yap, G.Wu, Q.Wang, D. Shen, "Intermediate Templates Guided Groupwise Registration of Diffusion Tensor Images," NeuroImage, vol. 54, no. 2, pp. 928-939, 2011. [pdf]
  29. P.-T. Yap, G. Wu, D. Shen, "Human Brain Connectomics: Networks, Techniques and Applications," IEEE Signal Processing Magazine, vol. 27, no. 4, 131-134, 2010. (Invited Paper) [pdf]
  30. P.-T. Yap, G. Wu, H. Zhu, W. Lin, D. Shen, "F-TIMER: Fast Tensor Image Morphing for Elastic Registration," IEEE Transactions on Medical Imaging, vol. 29, no. 5, pp. 1192-1203, 2010. [pdf]
  31. P.-T. Yap, X. Jiang and A. C. Kot, "Two Dimensional Polar Harmonic Transforms for Invariant Image Representation," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 32, no. 7, pp. 1259-1270, 2010. [pdf] [code]
  32. Q. Wang, G. Wu, P.-T. Yap, D. Shen, "Attribute Vector Guided Groupwise Registration," NeuroImage, vol. 50, no. 4, pp. 1485-1496, 2010. [pdf]
  33. F. Shi, D. Shen, P.-T. Yap, Y. Fan, J.-Z. Cheng, H. An, L. L. Wald, G. Gerig, J. H. Gilmore, and W. Lin "CENTS: Cortical Enhanced Neonatal Tissue Segmentation," Human Brain Mapping, vol. 32, pp. 382-396, 2010. [pdf]
  34. F. Shi, P.-T. Yap, Y. Fan, J. H Gilmore, W. Lin, D. Shen, "Construction of Multi-Region-Multi-Reference Atlases for Neonatal Brain MRI Segmentation," NeuroImage, vol. 51, no. 2, pp. 684-693, 2010. [pdf]
  35. Q. Wang, L. Chen, P.-T. Yap, G. Wu, D. Shen, "Groupwise Registration Based on Hierarchical Image Clustering and Atlas Synthesis," Human Brain Mapping, vol. 31, no. 8, pp. 1128-1140, Jan. 2010. [pdf]
  36. G. Wu, P.-T. Yap, D. Shen "TPS-HAMMER: Improving HAMMER Registration Algorithm by Soft Correspondence Matching and Thin-Plate Splines based Deformation Interpolation," NeuroImage, vol. 49, no. 3, pp. 2225-2233, February 2010. [pdf]
  37. P.-T. Yap, G. Wu, H. Zhu, W. Lin, D. Shen, "TIMER: Tensor Image Morphing for Elastic Registration," NeuroImage, vol. 47, no. 2, pp. 549-563, 2009. [pdf]
  38. P.-T. Yap, R. Paramesran, S.-H. Ong, "Image Analysis Using Hahn Moments," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 29, no. 11, pp. 2057-2062, November 2007. [pdf] [code]
  39. P.-T. Yap, R. Paramesran, "Eigenmoments," Pattern Recognition, vol. 40, no. 4, pp. 1234 - 1244, April 2007. [pdf]
  40. P.-T. Yap, R. Paramesran, "Content-Based Image Retrieval Using Legendre Chromaticity Distribution Moments," IEE Proceedings on Vision, Image and Signal Processing, vol. 153, no. 1, pp. 17 - 24, February 2006. [pdf]
  41. P.-T. Yap, R. Paramesran, "An Efficient Method for the Computation of Legendre Moments," IEEE Transactions of Pattern Analysis and Machine Intelligence, vol. 27, no. 12, pp. 1996-2002, December 2005. [pdf]
  42. P.-T. Yap, R. Paramesran, "Image Focus Measure Based on Chebyshev Moments," IEE Proceedings on Vision, Image and Signal Processing, vol. 151, no. 2, pp. 128 - 136, April 2004. [pdf]
  43. P.-T. Yap, R. Paramesran, "Image Analysis by Krawtchouk moments," IEEE Transactions on Image Processing, vol. 12, no. 11, pp. 1367-1377, November 2003. [pdf] [errata] [code]

*denotes equal contributions


Conference Articles
  1. K.-H. Thung, C.-Y. Wee, P.-T. Yap, D. Shen, "Identification of Alzheimer's Disease Using Incomplete Multimodal Dataset via Matrix Shrinkage and Completion," Workshop on Machine Learning in Medical Imaging (MLMI), MICCAI 2013, Nagoya, Japan, Sep. 22, 2013.
  2. C.-Y. Wee, S. Yang, P.-T. Yap, D. Shen, "Temporally Dynamic Resting-State Functional Connectivity Networks for Early MCI Identification," Workshop on Machine Learning in Medical Imaging (MLMI), MICCAI 2013, Nagoya, Japan, Sep. 22, 2013.
  3. P.-T. Yap, H. An, Y. Chen, D. Shen, "Estimating Uncertainty in White Matter Tractography Using Wild Non-Local Bootstrap," Workshop on Computational Diffusion MRI (CDMRI), MICCAI 2013, Nagoya, Japan, Sep. 22, 2013. (Oral Presentation)
  4. J. Cheng, R. Deriche, T. Jiang, D. Shen, P.-T. Yap, "Non-Negative Spherical Deconvolution (NNSD) for Fiber Orientation Distribution Function Estimation," Workshop on Computational Diffusion MRI (CDMRI), MICCAI 2013, Nagoya, Japan, Sep. 22, 2013. (Oral Presentation)
  5. P.-T. Yap, H. An, Y. Chen, D. Shen, "A Generative Model for Resolution Enhancement of Diffusion MRI Data," MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. (Acceptance Rate: 262/798 = 32.8%)
  6. P. Zhang, M. Niethammer, D. Shen, P.-T. Yap, "Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images with Explicit Orientation Optimization," MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. (Acceptance Rate: 262/798 = 32.8%; Oral Presentation: 37/798 = 4.6%; MICCAI Young Scientist Award - Honorable Mention)
  7. P. Zhang, C.-Y. Wee, M. Niethammer, D. Shen, P.-T. Yap, "Momentum Based Locality-Constrained Linear Coding for Image Classification," MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. (Acceptance Rate: 262/798 = 32.8%)
  8. J. Cheng, T. Jiang, R. Deriche, D. Shen, P.-T. Yap, "Regularized Spherical Polar Fourier Diffusion MRI with Optimal Dictionary Learning," MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. (Acceptance Rate: 262/798 = 32.8%)
  9. F. Shi, J. Cheng, L. Wang, P.-T. Yap, D. Shen, "Low-Rank Total Variation for Image Super Resolution," MICCAI 2013, Nagoya, Japan, Sep. 22-26, 2013. (Acceptance Rate: 262/798 = 32.8%)
  10. P.-T. Yap, H. An, Y. Chen, D. Shen, "The Non-Local Bootstrap - Estimation of Uncertainty in Diffusion MRI," Information Processing in Medical Imaging (IPMI 2013), Asilomar, California, USA, Jun. 29 - Jul. 3, 2013. (Acceptance Rate: 64 / 200 = 32%, Oral Presentation: 26 / 200 = 13%) [pdf]
  11. M. Liu, D. Zhang, P.-T. Yap, D. Shen, "Hierarchical Ensemble of Multi-level Classifiers for Diagnosis of Alzheimer's Disease," Machine Learning in Medical Imaging (MLMI 2012), Nice, France, Oct. 1, 2012. [pdf]
  12. S. Liao, D. Zhang, P.-T. Yap, G. Wu, D. Shen, "Group Sparsity Constrained Automatic Brain Label Propagation," Learning in Medical Imaging (MLMI 2012), Nice, France, Oct. 1, 2012. [pdf]
  13. P.-T. Yap, D. Shen, "DWI Denoising Using Spatial, Angular, and Radiometric Filtering," Multimodal Brain Image Analysis (MBIA 2012), MICCAI 2012, Nice, France, Oct. 1, 2012. [pdf]
  14. Y. Wang, H. Jia, P.-T. Yap, B. Cheng, C.-Y. Wee, L. Guo, D. Shen, "Groupwise Segmentation Improves Neuroimaging Classification Accuracy," Multimodal Brain Image Analysis (MBIA 2012), MICCAI 2012, Nice, France, Oct. 1, 2012. [pdf]
  15. P.-T. Yap, D. Shen, "Resolution Enhancement of Diffusion-Weighted Images by Local Fiber Profiling," MICCAI 2012, Nice, France, Oct. 1-5, 2012. (Acceptance Rate: 252/781 = 32.3%; Oral Presentation: 37/781=4.74%) [pdf]
  16. P.-T. Yap, D. Shen, "Spatial Warping of DWI Data Using Sparse Representation," MICCAI 2012, Nice, France, Oct. 1-5, 2012. (Acceptance Rate: 252/781 = 32.3%) [pdf]
  17. P. Zhang, M. Niethammer, D. Shen, P.-T. Yap, "Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images," MICCAI 2012, Nice, France, Oct. 1-5, 2012. (Acceptance Rate: 252/781 = 32.3%) [pdf]
  18. P. Zhang, P.-T. Yap, D. Shen, T. Cootes, "Initialising Groupwise Non-rigid Registration Using Multiple Parts+Geometry Models," MICCAI 2012, Nice, France, Oct. 1-5, 2012. (Acceptance Rate: 252/781 = 32.3%) [pdf]
  19. M. Liu, D. Zhang, P.-T. Yap, D. Shen, "Tree-Guided Sparse Coding for Brain Disease Classification," MICCAI 2012, Nice, France, Oct. 1-5, 2012. (Acceptance Rate: 252/781 = 32.3%) [pdf]
  20. C.-Y. Wee, P.-T. Yap, D. Zhang, L. Wang, D. Shen, "Constrained Sparse Functional Connectivity Networks for MCI Classification," MICCAI 2012, Nice, France, Oct. 1-5, 2012. (Acceptance Rate: 252/781 = 32.3%) [pdf]
  21. Y. Zhang, G. Wu, P.-T. Yap, Q. Feng, J. Lian,  W. Chen, D. Shen, "Non-Local Means Resolution Enhancement of Lung 4D-CT Data," MICCAI 2012, Nice, France, Oct. 1-5, 2012. (Acceptance Rate: 252/781 = 32.3%) [pdf]
  22. Y. Zhang, G. Wu, P.-T. Yap, Q. Feng, J. Lian, W. Chen, D. Shen, "Reconstruction of Super-Resolution Lung 4D-CT Using a Patch-Based Sparse Representation," CVPR 2012. (Acceptance Rate: 465/1933 = 24%)
  23. L. Wang, F. Shi, P.-T. Yap, J. H. Gilmore, W. Lin, and D. Shen, "Accurate and Consistent 4D Segmentation of Serial Infant Brain MR Images," Multimodal Brain Image Analysis (MBIA 2011), MICCAI 2011, Toronto, Canada, Sep. 18, 2011.
  24. Q. Wang, P.-T. Yap, G. Wu, D. Shen, "Diffusion Tensor Image Registration with Combined Tract and Tensor Features," MICCAI 2011, Toronto, Canada, Sep. 18-22, 2011. (Acceptance Rate: 251/819 = 30.7%, MICCAI Student Travel Award)
  25. Q. Wang, P.-T. Yap, G. Wu, D. Shen, "Fiber Modeling and Clustering Based on Neuroanatomical Features," MICCAI 2011, Toronto, Canada, Sep. 18-22, 2011. (Acceptance Rate: 251/819 = 30.7%)
  26. P.-T. Yap, J. H. Gilmore, W. Lin, D. Shen, "Reconstruction of Fiber Trajectories via Population-Based Estimation of Local Orientations," MICCAI 2011, Toronto, Canada, Sep. 18-22, 2011. (Acceptance Rate: 251/819 = 30.7%; Oral Presentation: 34/819 = 4.15%) [poster] [slides]
  27. P.-T. Yap, J. H. Gilmore, W. Lin, D. Shen, "Longitudinal Tractography with Application to Neuronal Fiber Trajectory Reconstruction in Neonates," MICCAI 2011, Toronto, Canada, Sep. 18-22, 2011. (Acceptance Rate: 251 / 819 = 30.7%)
  28. Y. Wang, J. Nie, P.-T. Yap, F. Shi, L. Guo, D. Shen, "Robust Deformable-Surface-Based Skull-Stripping for Large-Scale Studies," MICCAI 2011, Toronto, Canada, Sep. 18-22, 2011. (Acceptance Rate: 251/819 = 30.7%, MICCAI Student Travel Award; turned down due to conflicting travel plans)
  29. C.-Y. Wee, P.-T. Yap, D. Zhang, K. Denny, L. Wang, D. Shen, "Identification of Individuals with MCI via Multimodality Connectivity Networks," MICCAI 2011, Toronto, Canada, Sep. 18-22, 2011. (Acceptance Rate: 251/819 = 30.7%)
  30. L. Zhou, Y. Wang, Y. Li, P.-T. Yap, D. Shen, "Hierarchical Anatomical Brain Networks for MCI Prediction by Partial Least Square Analysis," CVPR 2011, Colorado Springs, U.S.A, Jun 21-23, 2011. (Acceptance Rate: 26.4%)
  31. Y. Wang, P. Chastain, P.-T. Yap, J.-Z. Cheng, D. Kaufman, L. Guo, D. Shen, "Automated DNA Fiber Tracking and Measurement," ISBI 2011, Chicago, Illinois, U.S.A, Mar 30-Apr 2, 2011.
  32. M. Kim, G. Wu, P.-T. Yap, D. Shen, "A Generalized Learning Based Framework for Fast Brain Image Registration," MICCAI 2010, Beijing, China, Sep. 20-24, 2010. (Acceptance Rate: 251/778 = 32.3%)
  33. C.-Y. Wee, P.-T. Yap, J.N. Brownyke, G.G. Potter, D.C. Steffens, K. Welsh-Bohmer, L. Wang, D. Shen, "Accurate Identification of MCI Patients via Enriched White-Matter Connectivity Network," MLMI, MICCAI 2010, Beijing, China, Sept. 20-24, pp. 140-147, 2010.
  34. P.-T. Yap, Y. Chen, H. An, J.H. Gilmore, W. Lin, D. Shen, "Hierachical Spherical Harmonics Based Deformable HARDI Registration," MIAR 2010, Beijing, China, Sep. 19-20, 2010.
  35. F. Shi, P.-T. Yap, J.H. Gilmore, W.i Lin, D. Shen, "Spatial-Temporal Constraint for Segmentation of Serial Infant Brain MR Images," MIAR 2010, Beijing, China, Sep. 19-20, 2010.
  36. Q. Wang, P.-T. Yap, H. Jia, G. Wu, D. Shen, "Hierarchical Fiber Clustering Based on Multi-Scale Neuroanatomical Features," MIAR 2010, Beijing, China, Sep. 19-20, 2010.
  37. F. Shi, P.-T. Yap, Y. Fan, J. H. Gilmore, W. Lin, and D. Shen, "Neonatal Brain MRI Segmentation by Building Multi-Region-Multi-Reference Atlases," ISBI 2010, Rotterdam, The Netherlands, Apr. 14-17, 2010. (Oral Presentation)
  38. G. Wu, P.-T. Yap, Q. Wang, and D. Shen, "Groupwise Registration from Exemplar to Group Mean: Extending HAMMER to Groupwise Registration," ISBI 2010, Rotterdam, The Netherlands, Apr. 14-17, 2010.
  39. Q. Wang, P.-T. Yap, G. Wu, D. Shen, "Attribute Vector Guided Groupwise Registration," MICCAI 2009, London, UK, Sept. 20 to 24, 2009. (Acceptance Rate: 259/804 = 32.2%)
  40. P.-T. Yap, G. Wu, H. Zhu, W. Lin, D. Shen, "F-TIMER: Fast Tensor Morphing for Elastic Registration," MICCAI 2009, London, UK, Sept. 20 to 24, 2009. (Acceptance Rate: 259/804 = 32.2%)
  41. F. Shi, P.-T. Yap, Y. Fan, J. Cheng, L. L. Wald, G. Gerig, W. Lin, D. Shen, "Cortical Enhanced Tissue Segmentation of Neonatal Brain MR Images Acquired by a Dedicated Phased Array Coil," MMBIA 2009, Miami Beach, Florida, June 20th, 2009.
  42. S. Tang, Y. Fan, H. Zhu, P.-T. Yap, W. Gao, W. Lin, D. Shen, "Regularization of Diffusion Tensor Field Using Coupled Robust Anisotropic Diffusion," MMBIA 2009, Miami Beach, Florida, June 20th, 2009.
  43. P.-T. Yap, G. Wu, H. Zhu, W. Lin, D. Shen, "TIMER: Tensor Image Morphing for Elastic Registration," MMBIA 2009, Miami Beach, Florida, June 20th, 2009. (Oral Presentation)
  44. P.-T. Yap, X. Jiang, A. C. Kot, "Boosted Complex Moments for Discriminant Rotation Invariant Object Recognition," in Proceedings of ICPR, December 8-11, 2008. pp. 1-4. (Oral Presentation)
  45. P.-T. Yap, X. Jiang, A. C. Kot, "LDA Enhanced Moments," in Proceedings of ICICS, December 2007. (Oral Presentation)
  46. P.-T. Yap and R. Paramesran, "An Image Watermarking Scheme Based on Orthogonal Moments," in Proceedings of TENCON, November 2005, pp. 1-4.
  47. P.-T. Yap and R. Paramesran, "Image Watermarking Using Tchebichef Moments," in Proceedings of TECHPOS, December 2004.
  48. P.-T. Yap and R. Paramesran, "Jacobi Moments as Image Features," in Proceedings of TENCON, November 2004, pp. 594-597.
  49. P.-T. Yap and R. Paramesran, "Local Watermarks Based on Krawtchouk moments," in Proceedings of TENCON, November 2004, pp. 73-76. (Oral, Awarded Travel Grant)
  50. P.-T. Yap and R. Paramesran, "Chebyshev Polynomials Based Moment Invariants With High Noise Tolerance," in Proceedings of M2USIC, 2003, pp. 123-126.
  51. P.-T. Yap and R. Paramesran, "Image Compression Using Discrete Tchebichef Transform With Zonal Coding," in Proceedings of AIAI, June 2003.
  52. P.-T. Yap and R. Paramesran, "Adaptive Feature Extraction Using Dual Hahn Moments," in Proceedings of AIAI, June 2003.
  53. P.-T. Yap and R. Paramesran, "Racah Moments as Image Features," in Proceedings of Integrating Technology in the Mathematical Sciences, 2003.
  54. P.-T. Yap and R. Paramesran, "A New Framework for Image Representation Using Discrete Orthogonal Moments," in Proceedings of TECHPOS, 2002, pp. 309-313.
  55. P.-T. Yap and R. Paramesran, "Image Restoration of Noisy Images Using Tchebichef moments," in Proceedings of Asia-Pacific Conference on Circuits and Systems, APCCAS, 2002, vol. 2, pp. 525-528.
  56. P.-T. Yap, R. Paramesran, and S.-H. Ong, "Krawtchouk Moments as a New Set of Discrete Orthogonal Moments for Image Reconstruction," in Proceedings of IJCNN, 2002, vol. 1, pp. 908-912.
  57. P.-T. Yap, R. Paramesran, and S.-H. Ong, "Chebyshev Moments as a New Set of Moments for Image Reconstruction," in Proceedings of IJCNN, 2001, vol. 4, pp. 2856-2860. (Awarded Travel Grant)

Abstracts
  1. J. Cheng, R. Deriche, T. Jiang, D. Shen, P.-T. Yap, “Non-Local Non-Negative Spherical Deconvolution for Single and Multiple Shell Diffusion MRI,” HARDI Reconstruction Challenge, International Symposium on Biomedical Imaging, 2013. (Honorable Mention; best technique in terms of local comparison)
  2. P.-T. Yap, H. An, Y. Chen, D. Shen, “The Non-Local Bootstrap Estimation of Uncertainty in Diffusion MRI,” OHBM Annual Meeting, Seatle, WA, USA, June 16-20, 2013.
  3. P. Zhang, M. Niethammer, D. Shen, P.-T. Yap, “Large Deformation Diffeomorphic Registration of Diffusion-Weighted Images with Explicit Orientation Optimization,” OHBM Annual Meeting, Seatle, WA, USA, June 16-20, 2013.
  4. P.-T. Yap, H. An, Y. Chen, D. Shen, “Fiber-Driven Resolution Enhancement of Diffusion-Weighted Images - An Evaluation Using High Resolution Data,” ISMRM’13, Salt Lake City, Utah, USA, April 20-26, 2013.
  5. J. Cheng, D. Shen, P.-T. Yap, “Non-Negative Spherical Deconvolution for Fiber Orientation Distribution Estimation,” ISMRM’13, Salt Lake City, Utah, USA, April 20-26, 2013.
  6. P.-T. Yap, D. Shen, "Super-Resolving Diffusion MRI Data Using Local Fiber Information," OHBM'12, Beijing, China, Jun. 10-14, 2012.
  7. C.-Y. Wee, Z. Zhao, P.-T. Yap, Y. Du, J. Xu, Y. Zhou, D. Shen, "Disrupted Brain Functional Network in Internet Addiction Disorder," OHBM'12, Beijing, China, Jun. 10-14, 2012.
  8. F. Shi, G. Wu, P.-T. Yap, H. Jia, J. H. Gilmore, W. Lin, D. Shen, "Infant 0-1-2 Brain Atlases for MRI Segmentation and Normalization," ISMRM'11, Montreal, Quebec, Canada, May 7-13, 2011. (Best Poster Award; Human Brain Disorders - Neuro 1)
  9. F. Shi, P.-T. Yap, J. K. Smith, K. S. Giovanello, C. Goerger, W. Lin, K. M. Guskiewicz, D. Shen, "Disrupted Anatomical Brain Connectivity in Retired Professional Football Players," ISMRM'11, Montreal, Quebec, Canada, May 7-13, 2011. (Oral Presentation)
  10. C.-Y. Wee, P.-T. Yap, L. Wang, D. Shen, "Resting-State fMRI Multi-Spectral Connectivity Networks for Classification of Mild Cognitive Impairment Patients," ISMRM'11, Montreal, Quebec, Canada, May 7-13, 2011.
  11. P.-T. Yap, J. H. Gilmore, W. Lin, D. Shen, "Accurate Estimation of Local Fiber Orientations for Groupwise Tractography," ISMRM'11, Montreal, Quebec, Canada, May 7-13, 2011.
  12. C.-Y. Wee, P.-T. Yap, J.N. Browndyke, G.G. Potter, D.C. Steffens, K.A. Welsh-Bohmer, L. Wang and D. Shen, "Accurate Identification of MCI Patients Using Multivariate White-Matter Connectomics," 96th RSNA Scientific Assembly and Annual Meeting, Chicago, Nov. 28-Dec. 3, 2010.
  13. P.-T. Yap, Y. Fan, Y. Chen, J. Gilmore, W. Lin, D. Shen, "Exploring Developmental Structural Connectivity Patterns by In Vivo Diffusion Tensor Imaging Tractography on Longitudinal Pediatric Data," ISMRM2010, Stockholm, Sweden, 1-7 May, 2010.
  14. P.-T. Yap, Y. Chen, H. An, J. Gilmore, W. Lin, D. Shen, "Non-Parametric Deformable Registration of High Angular Resolution Diffusion Data Using Diffusion Profile Statistics," ISMRM2010, Stockholm, Sweden, 1-7 May, 2010.
  15. P.-T. Yap, Y. Chen, H. An, J. Gilmore, W. Lin, D. Shen, "Fast Feature-Based Multi-Scale Registration of HARDI Data Using Fourth Order Tensors," ISMRM2010, Stockholm, Sweden, 1-7 May, 2010.
  16. F. Shi, Y. Fan, P.-T. Yap, W. Lin, J. Gilmore, D. Shen, "Altered small-world properties in newborns at high risk for schizophrenia," ISMRM2010, Stockholm, Sweden, 1-7 May, 2010.
  17. W. Gao, P.-T. Yap, H. Zhu, K. Giovanello, K. Smith, J. Gilmore, and W. Lin, "The Functional-Structural Interplay During First Two Years' Brain Development," ISMRM2010, Stockholm, Sweden, 1-7 May, 2010. (Oral Presentation)
  18. F. Shi, P.-T. Yap, Y. Fan, J. Gilmore, W. Lin, D. Shen, "Construction of Probabilistic Atlases for Neonates and One-year-olds," RNSA09, November 29-December 4, Chicago, 2009.
  19. P.-T. Yap, G. Wu, H. Zhu, W. Lin, D. Shen, "F-TIMER: Fast Tensor Image Morphing for Elastic Registration," RNSA09, November 29-December 4, Chicago, 2009. (Oral Presentation)
  20. P.-T. Yap, H. Zhu, W. Lin, D. Shen, "Hierarchical Diffusion Tensor Image Registration Based on Tensor Regional Distributions," ISMRM09, Hawaii, April 18-24, 2009.