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I am a Ph.D. candidate at the University of North Carolina at Chapel Hill. I am a member of the Dokholyan Group, and my doctoral research is in computational biophysics domain. I am affiliated with the Molecular & Cellular Biophysics and Bioinformatics & Computational Biology training programs. Prior to joining UNC-Chapel Hill, I recieved my Bachelor of Technology degree in Computer Science & Engineering from the Indian Institute of Technology, Kanpur. Even earlier, I was at Bhilai, the steel city of India for my high-school. To know about my current activities, visit my research page and publications. My Curriculum Vitae is available here.

contact

Shantanu Sharma
Department of Biochemistry and Biophysics,
120 Mason Farm Rd., Genetics Medicine University of North Carolina at Chapel Hill,
Chapel Hill, NC 27599-7260, Ph: (919) 966-3137 Fax: (919) 966-2852 email: firstname@unc.edu

select publications (full list)

  1. iFoldRNA: three-dimensional RNA structure prediction and folding. Sharma et al. Bioinformatics 2008 24(17):1951-2. [PDF]
  2. Probing protein aggregation using discrete molecular dynamics. Sharma et al. Frontiers in Bioscience 2008 13:4795-808. [PDF]
  3. Ab initio RNA folding by discrete molecular dynamics. Ding et al. RNA 2008 14(6):1164-73. [PDF]
  4. DNA sequence mediates nucleosome structure and stability. Sharma et al. Biophysical Journal 2007 94(1):1-3. [PDF]
  5. Molecular dynamic simulations of cisplatin and oxaliplatin. Sharma et al. J Mol Biol. 2007 373(5):1123-40. [PDF]
  6. Protein folding: then and now. Sharma et al. Arch. of Biochem & Biophys 2007 469(1):4-19. [PDF]
  7. Multiscale modeling of nucleosome dynamics. Sharma et al. Biophysical Journal 2007 92(5) 1457-70. [PDF]
  8. iFold: a platform for interactive folding simulations of proteins. Sharma et al. Bioinformatics 2006 22: 2693-4. [PDF]
  9. The path of DNA in the kinetochore. Bloom et al. Current Biology 2006 16:R276-R278. [PDF]
  10. Structure alignment via delaunay tetrahedralization. Roach et al. Proteins 2005 60(1):66-81. [PDF]