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This page lists some tricks with softwares you may find useful.
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iFoldAnalysis

The iFoldAnalysis software is used for post-simulation biophysical analyses of iFold trajectories. Please download it from here: iFoldAnalysis.

Xmgr on OS X (Intel)

ACE/gr is a 2D plotting tool for X Window System. It uses an OSF Motif-based user interface, and is popularly known as Xmgr. My physicist colleagues believe that the good old Xmgr has a much more poweful graphical user-interface than its successor, Grace. To install Xmgr on OS-X use this package: xmgr-4.1.2-IntelOSX.tar.gz Steps to follow: First install DarwinPorts. The disk-image installer file for the latest DarwinPorts package can be downloaded from here.
  1. Once DarwinPorts is installed, update the port:
    $ sudo su
    # port -d selfupdate 
  2. Next install automake autoconf X.org and OpenMotif:
    # port install automake
    # port instsll autoconf
    # port instsll xorg
    # port instsll openmotif
    
  3. Installing OpenMotif will install dependency packages which takes quite a while. Next, download the xmgr package:
    # cd /tmp
    # wget http://www.unc.edu/~shantanu/download/xmgr-4.1.2-IntelOSX.tar.gz
    # tar -zxvf xmgr-4.1.2-IntelOSX.tar.gz
    
  4. Next, configure the xmgr with DarwinPorts based library and config paths, and compile the sources:
    # cd xmgr-4.1.2-IntelOSX
    # ./configure --enable-extra-incpath=/opt/local/include/ --enable-extra-ldpath=/opt/local/lib/
    # make
    
  5. Finally copy the freshly built xmgr binary to, say, /opt/local/bin, cleanup and exit!
    # cp src/xmgr /opt/local/bin/
    # cd /tmp; rm -rf xmgr-*
    # exit
    
You may test your Xmgr installation using open-x11:
$ open-x11 xmgr
If everything went well - Hurray you have xmgr! :-)

TetraDA - Delaunay Analysis of Protein Structure