• ISI Citation Database
• NIST Atomic Spectra Level Database
• EMSL Gaussian Basis Set Database
• Database of Density functional repository
• NCBI PubMed (MEDLINE)
• Cambridge Small Molecule/Crystal Structure Databse
• QSAR Databases
• pKa values
• The Cambridge Cluster Database
• DrugBank: World's Largest Drug Database
• Pub3D: 3D Structures for PubChem
• ChemDB: The UC Irvine ChemDB
• IDDB: Investigational Drugs database
• Protein Data Bank
• AAindex: Database of Amino Acid Properties
• Nucleic Acids Database
• Nucleic Acids Database
• The ASTRAL Structure and Sequence Databse
• The PDBbind database
• ZINC: small-molecule docking database
• MOAD: protein-ligand binding database
• Database of O-glycosylated Proteins
• Database of Phosphorylation Sites
• ELM: Predicting functional sites in eukaryotic proteins
• Database of Macromolecular Movements
• iGNM: Databse of Protein Functional Motions
• AD-ENM: Analysis of Dynamics of Elastic Network Model
• Normal Mode Analysis of Proteins
• Flexweb: Analysis of Flexibility in Biomolecules and Networks
• ProMode: All-Atom-Model Databse of Normal Mode Analysis
• PRIDE: Proteomic Identification Database
• Chemical Safety Database: MSDS, CHEMINFO, and RTECS