Reverse Transcriptase Crystal Structures
 

 37 HIV-1 RT structures
 
PDB # Res. RT chains Mutation Complexed with RT Date Lab Reference
3hvt 2.9 p66/p51   NNI nevirapine 7/94 Steitz PNAS 91, 7242 (1994)
1hvu 4.75 p66/p51   Pseudoknot RNA 6/98 Steitz EMBO 17, 4535 (1998)
1har 2.2 fingers-palm     10/94 Unge Structure 2, 953 (1994)
1eet *       MSC204 2/00 Unge  
1hmv 3.2 p66/p51   unliganded 12/94 Harrison PNAS 92, 1222 (1995)
1rtd 3.2 p66/p51   dsDNA & dNTP 8/98 Harrison Science 282, 1669 (1998)
1hni 2.8 p66/p51   NNI a-APA 2/95 Arnold Structure 3, 365 (1995)
1hnv 3.0 p66/p51   NNI 8-Cl TIBO 3/95 Arnold Nat Str Biol 2, 407 (1995)
1dlo 2.7 p66/p51   unliganded 4/96 Arnold Structure 4, 853 (1996)
1tvr 3.0 p66/p51   NNI 9-Cl TIBO 4/96 Arnold JMB 264, 1085 (1996)
1uwb 3.2 p66/p51 Y181C, C280S NNI 8-Cl TIBO 11/96 Arnold JMB 264, 1085 (1996)
2hmi 2.8 p66/p51   dsDNA & antibody 4/98 Arnold JMB 284, 1095 (1998)
1bqm 3.1 p66/p51   HBY 097 8/98 Arnold JMB 284, 313 (1998)
1bqn 3.3 p66/p51 Y188L, C280S HBY 097 8/98 Arnold JMB 284, 313 (1998)
1qe1 2.85 p66/p51     7/99 Arnold PNAS 96, 10027 (1999)
1c9r 3.5 p66/p51 M184I DNA & antibody 8/99 Arnold PNAS 96, 10027 (1999)
1vrt 2.2 p66/p51   NNI nevirapine 4/95 Stammers Nat Str Biol 2, 293 (1995)
1vru 2.4 p66/p51   NNI 4/95 Stammers Nat Str Biol 2, 293 (1995)
1rth 2.2 p66/p51   NNI 5/95 Stammers Nat Str Biol 2, 293 (1995)
1rti 3.0 p66/p51   NNI 5/95 Stammers Nat Str Biol 2, 293 (1995)
1rtj 2.35 p66/p51   unliganded 5/95 Stammers Nat Str Biol 2, 303 (1995)
1rev 2.6 p66/p51   NNI 9-Cl TIBO 9/95 Stammers Structure 3, 915 (1995)
1rt1 2.55 p66/p51   NNI MKC-442 3/96 Stammers J Med Chem 39, 1589 (1996)
1rt2 2.55 p66/p51   NNI TNK-651 3/96 Stammers J Med Chem 39, 1589 (1996)
1klm 2.65 p66/p51   NNI U-90152 3/97 Stammers PNAS 94, 3984 (1997)
1rt3 3.0 p66/p51 D67N, K70R, T215F, K219Q   6/98 Stammers PNAS 95, 9518 (1998)
1rt4 2.9       7/98 Stammers Biochem 37, 14394 (1998)
1rt5 2.9       7/98 Stammers Biochem 37, 14394 (1998)
1rt6 2.8       7/98 Stammers Biochem 37, 14394 (1998)
1rt7 3.0       7/98 Stammers Biochem 37, 14394 (1998)
1c0t 2.7 p66/p51     7/99 Stammers J Med Chem 42, 3845 (1999)
1c0u 2.52 p66/p51     7/99 Stammers J Med Chem 42, 3845 (1999)
1c1b 2.5 p66/p51     7/99 Stammers J Med Chem 42, 4500 (1999)
1c1c 2.5 p66/p51     7/99 Stammers J Med Chem 42, 4500 (1999)
1dtq 2.8 p66/p51     1/00 Stammers JBC 275, 5633 (2000)
1dtt 3.0 p66/p51     1/00 Stammers JBC 275, 5633 (2000)
1ep4 *       S-1153 3/00 Stammers  
* structure on hold
 
 

5 MMLV RT structures
 
PDB # Res. Subdomains Complexed with RT Date Lab Reference
1mml 1.8 fingers-palm   7/95 Georgiadis Structure 3, 879 (1995)
1qai 2.3 fingers-palm DNA 3/99 Georgiadis JMB 296, 613 (2000)
1qaj 2.3 fingers-palm DNA 3/99 Georgiadis JMB 296, 613 (2000)
1d0e 3.0 fingers-palm DNA 9/99 Georgiadis JMB 296, 613 (2000)
1d1u 2.3 fingers-palm DNA 9/99 Georgiadis JMB 296, 613 (2000)

 
 
 

Missing residues in HIV-1 Reverse Transcriptase crystal structures
 
66 kd subunit (chain A)   51 kd subunit (chain B)
structure 1st
residue
Missing residues Last
residue
1st
residue
Missing residues Last
residue
1bqm 1   558 1   430
1bqn 1   558 1   430
1c0t 4 28-44, 49-53, 63-72, 131-143 539 6 88-95, 191-232 428
1c0u 1   539 6 88-92, 216-231 440
1c1b 1 66-69, 89-90 543 5 89-92, 218-230 436
1c1c 1 67-68 539 5 89-92, 216-231 440
1c9r 1   558 1   430
1dlo 1   556 1 219-230 427
1dtq 4 444-454 539 5 214-230, 357-361 428
1dtt 1 140-141 543 5 89-91, 218-230 432
1har 1 64-70, 91-103 216      
1hmv 1 64-74, 134-140 554 5 66-70, 212-234 427
1hni 1   558 1   427
1hnv 1   558 1   427
1hvu 1   554 5 212-234 427
1klm 2   539 6 89-95, 216-231 433
1qe1 1   556 1 219-230 427
1rev 4 444-454 539 2 216-230 428
1rt1 1   539 6 89-92, 216-231 440
1rt2 1   543 6 90-94, 212-231 432
1rt3 2 136-139, 444-454 537 5 88-93, 215-230, 358-361 428
1rt4 1 137-141 542 5 88-92, 213-232 433
1rt5 1 137-141 542 6 88-92, 217-232 432
1rt6 1   539 6 89-92, 216-232 440
1rt7 4   539 6 89-92, 216-231 440
1rtd 1   554 3 218-230 429
1rth 1   543 3 88-90, 218-230 438
1rti 1   543 5 88-94, 218-230 437
1rtj 1   543 2 218-230 440
1tvr 1   558 1   427
1uwb 1   558 1   427
1vrt 4 444-454 539 5 89-91, 216-230, 357-361 428
1vru 3 444-454 539 4 218-230, 357-358 428
2hmi 1   558 1   430
3hvt 2   556 2 226-249, 359-363 428

Last updated July 30, 2000